species:   Fugra
pid:       PID0945
parent:    FgmilR-7dps-18
paralog:   
locus:     NC_026474.1:11103073-11103143
matures:   ['UAUCCAGUUCGUUCGUAGGCU', 'CUGCGGAGACUGGCGCGUAAA']
srr:       SRR6516242
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516242.cram NC_026474.1:11103073-11103143

3 out of bounds
8 alignments
8 proper strand
8 stranded perfect matches

 ***********************                       *********************** 
CUUUAUCCAGUUCGUUCGUAGGCUUAGAACGCUGUUUCGGUUCUUGAAGCUGCGGAGACUGGCGCGUAAAG
((((((((((((..(((((((.((((((((.........)))))..))))))))))))))))...))))))
---UAUCCAGUUCGUUCGUAGGCU----------------------------------------------- l=21 a=7 c
-------------------------------------------------CUGCGGAGACUGGCGCGUAAA- l=21 a=0 c*
---UAUCCAGUUCGUUCGUAGGCU----------------------------------------------- l=21 a=7 ma
-------------------------------------------------CUGCGGAGACUGGCGCGUAAA- l=21 a=0 ma*

---UAUCCAGUUCGUUCGUAGGCU----------------------------------------------- l=21 a=7 (c,ma)
------------------------------------------CUUGAAGCUGCGGAGACUGGCGC------ l=23 a=1 

mb-01111
ax-1011111
ku-01
ss-111111111110
fn-111
